Tasks

  1. Google the following: web plot digitizer
  2. Load image "nassif-16percent-slope.png" (see below)
  3. Create four csv files, one for each data set. Call them whatever you want. Legend: white circle = 312 mm/h, triangle = 234 mm/h, x = 156 mm/h, black circle = 78 mm/h.

The image is the second panel of Fig. 8, from

Nassif, S. H., and E. M. Wilson, 1975, "THE INFLUENCE OF SLOPE AND RAIN INTENSITY ON RUNOFF AND INFILTRATION", Hydrological Sciences Journal. download here

Import relevant packages

#collapse-hide

import numpy as np
import matplotlib.pyplot as plt
import seaborn as sns
sns.set(style="ticks", font_scale=1.5)
from scipy.optimize import curve_fit
import matplotlib.patches as patches

Load all four files you created. Use numpy's function loadtxt. Make sure that the first point in each table corresponds to the appropriate rainfall rate. You can normalize the data if it is not.

#collapse-hide

d1 = np.loadtxt("input_rate_078mm_per_h_16percent_slope.csv", delimiter=',')
d2 = np.loadtxt("input_rate_156mm_per_h_16percent_slope.csv", delimiter=',')
d3 = np.loadtxt("input_rate_234mm_per_h_16percent_slope.csv", delimiter=',')
d4 = np.loadtxt("input_rate_312mm_per_h_16percent_slope.csv", delimiter=',')
d1[:,1] = 78  * d1[:,1] / d1[:,1].max()
d2[:,1] = 156 * d2[:,1] / d2[:,1].max()
d3[:,1] = 234 * d3[:,1] / d3[:,1].max()
d4[:,1] = 312 * d4[:,1] / d4[:,1].max()

Reproduce the original figure, make it look good, something like this:

#collapse-hide

fig, ax = plt.subplots(figsize=(10,7))
ax.plot(d4[:,0], d4[:,1], 'o', markerfacecolor="None", label=r"water input = 312 mm h$^{-1}$")
ax.plot(d3[:,0], d3[:,1], '^', label=r"water input = 234 mm h$^{-1}$")
ax.plot(d2[:,0], d2[:,1], 'x', label=r"water input = 156 mm h$^{-1}$")
ax.plot(d1[:,0], d1[:,1], 'o', label=r"water input = 78 mm h$^{-1}$")
ax.set(xlabel="Time (min)",
       ylabel=r"Infiltration rate (mm h$^{-1}$)")
ax.legend(loc="upper right");

Horton's equation

$$ f = f_c+(f_0-f_c)e^{-\beta t} $$
  • $f$: infiltration rate
  • $f_c$: infiltration capacity at large $t$
  • $f_0$: initial infiltration capacity
  • $\beta$: best fit empirical parameter

Write a function called horton, that receives time t and the three parameters, and returns the right-hand side of the equation above. Plot one of the data sets, together with a guess of the parameters that should roughly fit the data.

#collapse-hide

def horton(t, fc, f0, beta):
    return fc + (f0 - fc)*np.exp(-beta*t)

fig, ax = plt.subplots(figsize=(10,7))
t = d1[:,0]
t = t - t[0]
f = d1[:,1]
ax.plot(t, f, 'o', label="data")
ax.plot(t, horton(t, 35, 80, 0.5), '-', label="horton")
ax.set(xlabel="time (min)",
       ylabel="infiltration rate (mm/h)")
ax.legend(loc="upper right");

Find the best fit for the parameters $f_c, f_0, \beta$. Calculate the $R^2$ for each data set.

For the best fit, use scipy's curve_fit. Write a function to compute the R-squared of your fit.

#collapse-hide

def horton(t, fc, f0, beta):
    return fc + (f0 - fc)*np.exp(-beta*t)

def best_fit(data):
    t = data[:,0]
    t0 = t[0]
    t = t - t0
    f = data[:,1]
    # best fit
    popt, pcov = curve_fit(f=horton,             # model function
                           xdata=t,              # x data
                           ydata=f,              # y data
                           p0=(130, 800, 0.5),   # initial guess of the parameters
                          )
    return [popt, pcov]

def calculate_r_squared(data, popt):
    t = data[:,0]
    t = t - t[0]
    f = data[:,1]
    # Calculate residuals
    residuals = f - horton(t, *popt)
    # You can get the residual sum of squares (ss_res) with
    ss_res = np.sum(residuals**2)
    # You can get the total sum of squares (ss_tot) with
    ss_tot = np.sum((f - np.mean(f))**2)
    # And finally, the r_squared-value with,
    r_squared = 1 - (ss_res / ss_tot)
    return r_squared

def plot_best_fit(data, axis, marker, markercolor):
    # calculate best fit parameters
    popt, pcov = best_fit(data)
    t = data[:,0]
    f = data[:,1]
    # plot data points
    ax.plot(t, f, marker, markerfacecolor=markercolor, markeredgecolor="black")
    # plot best fit line
    r_squared = calculate_r_squared(data, popt)
    labeltext = r"$f_c=$ {:.2f}, $f_0=$ {:.2f}, $\beta=$ {:.2f}, $R^2=$ {:.2f}".format(popt[0],popt[1],popt[2], r_squared)
    ax.plot(t, horton(t-t[0], *popt), color=markercolor, label=labeltext)    

fig, ax = plt.subplots(figsize=(10,7))
plot_best_fit(d1, ax, 'o', "tab:red")
plot_best_fit(d2, ax, 'x', "tab:blue")
plot_best_fit(d3, ax, '^', "tab:orange")
plot_best_fit(d4, ax, 'd', "tab:green")
ax.set(xlabel="time (min)",
       ylabel="infiltration rate (mm/h)")
ax.legend();

Make a graph of the infiltration rate and of the runoff, as a function of time. Use any of the four data sets you have.

#collapse-hide

fig, ax = plt.subplots(figsize=(10,7))
data = d4
t = data[:, 0]
f = data[:, 1]
t = np.concatenate([ [0], t])
f = np.concatenate([ [f[0]], f])
runoff = f[0] - f
ax.plot(t, f*0 + f[0], ls="--", color="black", label="rainfall")
ax.plot(t, f, color="tab:blue", lw=3, label=r"infiltration")
ax.plot(t, runoff, color="tab:orange", lw=3, label=r"runoff")
ax.set(xlabel="Time (min)",
       ylabel=r"Rate (mm h$^{-1}$)")
ax.legend(loc="lower right");

Green & Ampt

$$f = \frac{A}{F} + B$$

where

  • $A = K_\text{sat}\cdot|\psi_f|\cdot \left( \phi - \theta_0 \right)$
  • $B= K_\text{sat}$

Write a function that calculates the cumulative of the infiltration rate.

$$ F(t) = \int_0^t f(t) \text{ d}t $$

Use numpy's trapz function, that implements the "trapezoidal rule"

#collapse-hide

def cumulative_F(t, f):
    F = np.array([0])
    t = t/60 # convert minute to hour
    for i in np.arange(2,len(t)+1):
        area = np.trapz(f[:i], t[:i])
        F = np.concatenate([F, [area]])
    return F

fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(10,7))
t, f = d1[:,0], d1[:,1]
F = cumulative_F(t, f)
ax1.plot(t, f, label="f, rate")
ax2.plot(t, F, label="F, cumulative")
ax1.set(xlabel="t (min)",
        ylabel="f (mm/h)")
ax2.set(xlabel="t (min)",
        ylabel="F (mm)")
ax2.yaxis.set_label_position("right")

Plot $f$ as a function of $F$. Try to guess $A$ and $B$ that give reasonable results.

#collapse-hide

fig, ax = plt.subplots(figsize=(10,7))
t, f = d1[:,0], d1[:,1]
F = cumulative_F(t, f)
ax.plot(F, f)
A=50; B=30;
ax.plot(F, A/F + B, 'o')
ax.set(xlabel="F",
       ylabel="f")
/Users/yairmau/anaconda3/lib/python3.7/site-packages/ipykernel_launcher.py:8: RuntimeWarning: divide by zero encountered in true_divide
  
[Text(0.5, 0, 'F'), Text(0, 0.5, 'f')]

Use the curve_fit to find the optimal values for $A$ and $B$.

#collapse-hide

def G_and_A(F, A, B):
    return A/F + B

popt, pcov = curve_fit(f=G_and_A,     # model function
                       xdata=F[1:],       # x data
                       ydata=f[1:],       # y data
                       p0=(50, 30),   # initial guess of the parameters
                      )

# popt, pcov = curve_fit(G_and_A, F[1:], f[1:], p0=(50, 30))  # p0 = initial guess
print(popt)

fig, ax = plt.subplots(figsize=(10,7))
ax.plot(F, f)
ax.plot(F[1:], popt[0]/F[1:] + popt[1], 'o')
ax.set(xlabel="F",
       ylabel="f")
[24.12368526 36.34242813]
[Text(0.5, 0, 'F'), Text(0, 0.5, 'f')]

Homework

Go to Soil Texture Calculator, estimate the texture of "standard soil" in Nassif & Wilson, 1975.